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	1. 7306 Accesses	Review Using graph theory to analyze biological networks Georgios A Pavlopoulos, Maria Secrier, Charalampos N Moschopoulos, Theodoros G Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G Bagos BioData Mining 2011, 4:10 (28 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	2. 4144 Accesses	Research Comprehensive analysis of human microRNA target networks Jun-ichi Satoh, Hiroko Tabunoki BioData Mining 2011, 4:17 (17 June 2011) Abstract \| Full text \| PDF \| PubMed
	3. 3566 Accesses	Review A survey of visualization tools for biological network analysis Georgios A Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider BioData Mining 2008, 1:12 (28 November 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	4. 3123 Accesses	Review A reference guide for tree analysis and visualization Georgios A Pavlopoulos, Theodoros G Soldatos, Adriano Barbosa-Silva, Reinhard Schneider BioData Mining 2010, 3:1 (22 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	5. 2711 Accesses	Research Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database Masanori Arita, Kazuhiro Suwa BioData Mining 2008, 1:7 (17 September 2008) Abstract \| Full text \| PDF \| PubMed
	6. 2481 Accesses	Research A comparison of machine learning techniques for survival prediction in breast cancer Leonardo Vanneschi, Antonella Farinaccio, Giancarlo Mauri, Mauro Antoniotti, Paolo Provero, Mario Giacobini BioData Mining 2011, 4:12 (11 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	7. 2479 Accesses	Research Partitioning clustering algorithms for protein sequence data sets Sondes Fayech, Nadia Essoussi, Mohamed Limam BioData Mining 2009, 2:3 (2 April 2009) Abstract \| Full text \| PDF \| PubMed
	8. 2411 Accesses	Software article Fast Gene Ontology based clustering for microarray experiments Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi BioData Mining 2008, 1:11 (21 November 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	9. 2393 Accesses	Editorial Mining the diseasome Davnah Urbach, Jason H Moore BioData Mining 2011, 4:25 (9 September 2011) Abstract \| Full text \| PDF \| PubMed
	10. 2286 Accesses	Software article An R package implementation of multifactor dimensionality reduction Stacey J Winham, Alison A Motsinger-Reif BioData Mining 2011, 4:24 (16 August 2011) Abstract \| Full text \| PDF \| PubMed
	11. 2285 Accesses	Research Detection of changes in gene regulatory patterns, elicited by perturbations of the Hsp90 molecular chaperone complex, by visualizing multiple experiments with an animation Pablo C Echeverría, Fedor Forafonov, Deo P Pandey, Guillaume Mühlebach, Didier Picard BioData Mining 2011, 4:15 (14 June 2011) Abstract \| Full text \| PDF \| PubMed
	12. 2259 Accesses	Review A review of estimation of distribution algorithms in bioinformatics Rubén Armañanzas, Iñaki Inza, Roberto Santana, Yvan Saeys, Jose Flores, Jose Lozano, Yves Peer, Rosa Blanco, Víctor Robles, Concha Bielza, Pedro Larrañaga BioData Mining 2008, 1:6 (11 September 2008) Abstract \| Full text \| PDF \| PubMed
	13. 2152 Accesses	Methodology Grammatical evolution decision trees for detecting gene-gene interactions Alison A Motsinger-Reif, Sushamna Deodhar, Stacey J Winham, Nicholas E Hardison BioData Mining 2010, 3:8 (18 November 2010) Abstract \| Full text \| PDF \| PubMed
	14. 2113 Accesses	Research DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization Sinan Erten, Gurkan Bebek, Rob M Ewing, Mehmet Koyutürk BioData Mining 2011, 4:19 (24 June 2011) Abstract \| Full text \| PDF \| PubMed
	15. 2035 Accesses	Methodology Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data Sami K Kilpinen, Kalle A Ojala, Olli P Kallioniemi BioData Mining 2011, 4:5 (31 March 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	16. 1980 Accesses	Methodology Preprocessing differential methylation hybridization microarray data Shuying Sun, Yi-Wen Huang, Pearlly S Yan, Tim HM Huang, Shili Lin BioData Mining 2011, 4:13 (16 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	17. 1942 Accesses	Research Fast approximate hierarchical clustering using similarity heuristics Meelis Kull, Jaak Vilo BioData Mining 2008, 1:9 (22 September 2008) Abstract \| Full text \| PDF \| PubMed
	18. 1934 Accesses	Software article Caipirini: using gene sets to rank literature Theodoros G Soldatos, Seán I O'Donoghue, Venkata P Satagopam, Adriano Barbosa-Silva, Georgios A Pavlopoulos, Ana Wanderley-Nogueira, Nina Soares-Cavalcanti, Reinhard Schneider BioData Mining 2012, 5:1 (1 February 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary 'Caipirini', a new software program, allows ranking of biomedical literature based on biological relevance to gene sets, thereby enabling data from these high-throughput experiments to be more easily accessed.
	19. 1930 Accesses	Research Database mining for selection of SNP markers useful in admixture mapping Tesfaye M Baye, Hemant K Tiwari, David B Allison, Rodney C Go BioData Mining 2009, 2:1 (14 February 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	20. 1757 Accesses	Short report Interpol: An R package for preprocessing of protein sequences Dominik Heider, Daniel Hoffmann BioData Mining 2011, 4:16 (17 June 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21. 1695 Accesses	Research Taxon ordering in phylogenetic trees by means of evolutionary algorithms Francesco Cerutti, Luigi Bertolotti, Tony L Goldberg, Mario Giacobini BioData Mining 2011, 4:20 (1 July 2011) Abstract \| Full text \| PDF \| PubMed
	22. 1671 Accesses	Methodology Discrete derivative: a data slicing algorithm for exploration of sharing biological networks between rheumatoid arthritis and coronary heart disease Guang Zheng, Miao Jiang, Xiaojuan He, Jing Zhao, Hongtao Guo, Gao Chen, Qinglin Zha, Aiping Lu BioData Mining 2011, 4:18 (23 June 2011) Abstract \| Full text \| PDF \| PubMed
	23. 1646 Accesses	Research Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes Antonio Reverter, Aaron Ingham, Brian P Dalrymple BioData Mining 2008, 1:8 (19 September 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A new algorithm, which mines databases of tissue specificity, gene connectivity and disease association, has identified a new group of genes that interact with disease causing genes and impact on disease outcomes.
	24. 1591 Accesses	Research A multilevel layout algorithm for visualizing physical and genetic interaction networks, with emphasis on their modular organization Johannes Tuikkala, Heidi Vähämaa, Pekka Salmela, Olli S Nevalainen, Tero Aittokallio BioData Mining 2012, 5:2 (26 March 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary New multilevel network layout algorithms allow researchers to create biologically relevant and visually pleasing network graphs for large datasets within a multi optimization framework.
	25. 1584 Accesses	Research 3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini BioData Mining 2009, 2:8 (4 December 2009) Abstract \| Full text \| PDF \| PubMed