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	1. 745 Accesses	Software article Caipirini: using gene sets to rank literature Theodoros G Soldatos, Sean I O'Donoghue, Venkata P Satagopam, Adriano Barbosa-Silva, Georgios A Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina Mota Soares-Cavalcanti, Reinhard Schneider BioData Mining 2012, 5:1 (1 February 2012) Abstract \| Provisional PDF \| PubMed \| Editor’s summary 'Caipirini', a new software program, allows ranking of biomedical literature based on biological relevance to gene sets, thereby enabling data from these high-throughput experiments to be more easily accessed.
	2. 469 Accesses	Review Using graph theory to analyze biological networks Georgios A Pavlopoulos, Maria Secrier, Charalampos N Moschopoulos, Theodoros G Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G Bagos BioData Mining 2011, 4:10 (28 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	3. 358 Accesses	Review A survey of visualization tools for biological network analysis Georgios A Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider BioData Mining 2008, 1:12 (28 November 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	4. 303 Accesses	Review A reference guide for tree analysis and visualization Georgios A Pavlopoulos, Theodoros G Soldatos, Adriano Barbosa-Silva, Reinhard Schneider BioData Mining 2010, 3:1 (22 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	5. 237 Accesses	Short report Interpol: An R package for preprocessing of protein sequences Dominik Heider, Daniel Hoffmann BioData Mining 2011, 4:16 (17 June 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	6. 223 Accesses	Research Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers J Nikolaj Dybowski, Mona Riemenschneider, Sascha Hauke, Martin Pyka, Jens Verheyen, Daniel Hoffmann, Dominik Heider BioData Mining 2011, 4:26 (14 November 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Machine-learning can be used to predict the resistance of HIV-1 to antiretroviral drugs like Bevirimat in order to identify which patients will benefit from these new drugs, thereby improving the provision of a personalized therapy.
	7. 205 Accesses	Review A review of estimation of distribution algorithms in bioinformatics Rubén Armañanzas, Iñaki Inza, Roberto Santana, Yvan Saeys, Jose Flores, Jose Lozano, Yves Peer, Rosa Blanco, Víctor Robles, Concha Bielza, Pedro Larrañaga BioData Mining 2008, 1:6 (11 September 2008) Abstract \| Full text \| PDF \| PubMed
	8. 202 Accesses	Research Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database Masanori Arita, Kazuhiro Suwa BioData Mining 2008, 1:7 (17 September 2008) Abstract \| Full text \| PDF \| PubMed
	9. 190 Accesses	Software article Fast Gene Ontology based clustering for microarray experiments Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi BioData Mining 2008, 1:11 (21 November 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	10. 189 Accesses	Software article An R package implementation of multifactor dimensionality reduction Stacey J Winham, Alison A Motsinger-Reif BioData Mining 2011, 4:24 (16 August 2011) Abstract \| Full text \| PDF \| PubMed
	11. 185 Accesses	Research Comprehensive analysis of human microRNA target networks Jun-ichi Satoh, Hiroko Tabunoki BioData Mining 2011, 4:17 (17 June 2011) Abstract \| Full text \| PDF \| PubMed
	12. 181 Accesses	Research Partitioning clustering algorithms for protein sequence data sets Sondes Fayech, Nadia Essoussi, Mohamed Limam BioData Mining 2009, 2:3 (2 April 2009) Abstract \| Full text \| PDF \| PubMed
	13. 169 Accesses	Research Fast approximate hierarchical clustering using similarity heuristics Meelis Kull, Jaak Vilo BioData Mining 2008, 1:9 (22 September 2008) Abstract \| Full text \| PDF \| PubMed
	14. 161 Accesses	Editorial Mining the diseasome Davnah Urbach, Jason H Moore BioData Mining 2011, 4:25 (9 September 2011) Abstract \| Full text \| PDF \| PubMed
	15. 152 Accesses	Research A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data Wassim Ayadi, Mourad Elloumi, Jin-Kao Hao BioData Mining 2009, 2:9 (16 December 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	16. 144 Accesses	Methodology Discrete derivative: a data slicing algorithm for exploration of sharing biological networks between rheumatoid arthritis and coronary heart disease Guang Zheng, Miao Jiang, Xiaojuan He, Jing Zhao, Hongtao Guo, Gao Chen, Qinglin Zha, Aiping Lu BioData Mining 2011, 4:18 (23 June 2011) Abstract \| Full text \| PDF \| PubMed
	17. 144 Accesses	Review Clustering-based approaches to SAGE data mining Haiying Wang, Huiru Zheng, Francisco Azuaje BioData Mining 2008, 1:5 (17 July 2008) Abstract \| Full text \| PDF \| PubMed
	18. 142 Accesses	Methodology Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments Ole Schulz-Trieglaff, Egidijus Machtejevas, Knut Reinert, Hartmut Schlüter, Joachim Thiemann, Klaus Unger BioData Mining 2009, 2:4 (7 April 2009) Abstract \| Full text \| PDF \| PubMed
	19. 134 Accesses	Review Neural networks for genetic epidemiology: past, present, and future Alison A Motsinger-Reif, Marylyn D Ritchie BioData Mining 2008, 1:3 (17 July 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	20. 133 Accesses	Research DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization Sinan Erten, Gurkan Bebek, Rob M Ewing, Mehmet Koyutürk BioData Mining 2011, 4:19 (24 June 2011) Abstract \| Full text \| PDF \| PubMed
	21. 133 Accesses	Methodology Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data Sami K Kilpinen, Kalle A Ojala, Olli P Kallioniemi BioData Mining 2011, 4:5 (31 March 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	22. 132 Accesses	Research Database mining for selection of SNP markers useful in admixture mapping Tesfaye M Baye, Hemant K Tiwari, David B Allison, Rodney C Go BioData Mining 2009, 2:1 (14 February 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	23. 132 Accesses	Research 3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini BioData Mining 2009, 2:8 (4 December 2009) Abstract \| Full text \| PDF \| PubMed
	24. 131 Accesses	Methodology Preprocessing differential methylation hybridization microarray data Shuying Sun, Yi-Wen Huang, Pearlly S Yan, Tim HM Huang, Shili Lin BioData Mining 2011, 4:13 (16 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25. 119 Accesses	Research Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes Antonio Reverter, Aaron Ingham, Brian P Dalrymple BioData Mining 2008, 1:8 (19 September 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A new algorithm, which mines databases of tissue specificity, gene connectivity and disease association, has identified a new group of genes that interact with disease causing genes and impact on disease outcomes.