|
Most informative GO terms for the clusters obtained from microarray data. |
||||
| Cluster |
Size |
p-value |
IC |
GO term |
|
|
||||
| G1 |
8 |
0.0063 |
1.835 |
cytoplasm |
| G2 |
4 |
0.20 |
1.835 |
cytoplasm |
| 0.888 |
binding |
|||
| G3 |
2 |
0.009 |
8.751 |
aminoacyl-tRNA ligase activity |
| 5.841 |
translation |
|||
| 0.888 |
binding |
|||
| G4 |
19 |
0.020 |
0.888 |
binding |
| G5 |
2 |
0.0007 |
12.012 |
carbon-sulfur lyase activity |
| 1.835 |
cytoplasm |
|||
| 1.753 |
primary metabolic process |
|||
| G6 |
2 |
0.21 |
4.705 |
negative regulation of biological process |
| 3.420 |
hydrolase activity |
|||
| 3.411 |
cellular protein metabolic process |
|||
| G7 |
8 |
0.020 |
1.366 |
membrane |
| G8 |
2 |
0.25 |
4.238 |
transporter activity |
| 3.181 |
transport |
|||
| 2.866 |
integral to membrane |
|||
| G9 |
6 |
< 0.0001 |
3.967 |
extracellular region |
|
IC is the information content of given term. P-values are derived using a permutation test with 10000 repetitions. At most three GO terms are shown for each cluster. Only common GO terms with IC > 0 are shown. | ||||
Ovaska et al. BioData Mining 2008 1:11 doi:10.1186/1756-0381-1-11 |
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