|
Genes corresponding to the most statistically significant clusters found in the case study. |
|
| Cluster |
Genes |
|
|
|
| G1 |
PDCL3 MAGED1 (two probe sets) PRKCE PRDX1 CLIC4 MRPS23 |
| GABARAPL3 |
|
| G2 |
CBR3 RANBP17 NBEA FVT1 |
| G3 |
LRRC47 WARS |
| G4 |
NANOGP8 ZNF215 POU5F1 MYBL2 L1TD1 CITED2 TCEA2 SMARCAD1 |
| MKI67IP CPSF4 PPFIBP2 WDSUB1 PPP3CA ISG20L1 TIPARP CEP290 |
|
| DPPA4 TJP2 NLRP7 |
|
| G5 |
CTH GLO1 |
| G6 |
PLAU PPAP2A |
| G7 |
TLR5 OR5R1 TMEM106C IFITM1 PCDHB5 PCDHB11 AC069513.28 PLK3 |
| G8 |
SLC22A17 FLVCR1 |
| G9 |
PDGFA IGSF21 GDF3 CCDC80 GAL TF |
|
MAGED1 has two distinct differentially expressed probe sets. Genes are ordered from bottom to top in Figure 1. For example, the genes in cluster G1 in Figure 1 are, from bottom to top, PDCL3, two probe sets for MAGED1, PRKCE, etc. | |
Ovaska et al. BioData Mining 2008 1:11 doi:10.1186/1756-0381-1-11 |
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