BioData Mining | Most Viewed

Submit a manuscript Register

Explore BioData Mining

Articles

Display/download options Articles per page: 25 | 50 | 100

Display options

Editor's summary Citation

Download options

Send
To

	All
	1. 440 Accesses	Review Using graph theory to analyze biological networks Georgios A Pavlopoulos, Maria Secrier, Charalampos N Moschopoulos, Theodoros G Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G Bagos BioData Mining 2011, 4:10 (28 April 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	2. 363 Accesses	Software article Caipirini: using gene sets to rank literature Theodoros G Soldatos, Sean I O'Donoghue, Venkata P Satagopam, Adriano Barbosa-Silva, Georgios A Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina Mota Soares-Cavalcanti, Reinhard Schneider BioData Mining 2012, 5:1 (1 February 2012) Abstract \| Provisional PDF \| Editor’s summary 'Caipirini', a new software program, allows ranking of biomedical literature based on biological relevance to gene sets, thereby enabling data from these high-throughput experiments to be more easily accessed.
	3. 319 Accesses	Review A survey of visualization tools for biological network analysis Georgios A Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider BioData Mining 2008, 1:12 (28 November 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	4. 265 Accesses	Research Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database Masanori Arita, Kazuhiro Suwa BioData Mining 2008, 1:7 (17 September 2008) Abstract \| Full text \| PDF \| PubMed
	5. 248 Accesses	Review A reference guide for tree analysis and visualization Georgios A Pavlopoulos, Theodoros G Soldatos, Adriano Barbosa-Silva, Reinhard Schneider BioData Mining 2010, 3:1 (22 February 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	6. 233 Accesses	Research Partitioning clustering algorithms for protein sequence data sets Sondes Fayech, Nadia Essoussi, Mohamed Limam BioData Mining 2009, 2:3 (2 April 2009) Abstract \| Full text \| PDF \| PubMed
	7. 231 Accesses	Research Comprehensive analysis of human microRNA target networks Jun-ichi Satoh, Hiroko Tabunoki BioData Mining 2011, 4:17 (17 June 2011) Abstract \| Full text \| PDF \| PubMed
	8. 220 Accesses	Software article Fast Gene Ontology based clustering for microarray experiments Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi BioData Mining 2008, 1:11 (21 November 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	9. 210 Accesses	Software article An R package implementation of multifactor dimensionality reduction Stacey J Winham, Alison A Motsinger-Reif BioData Mining 2011, 4:24 (16 August 2011) Abstract \| Full text \| PDF \| PubMed
	10. 209 Accesses	Research Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers J Nikolaj Dybowski, Mona Riemenschneider, Sascha Hauke, Martin Pyka, Jens Verheyen, Daniel Hoffmann, Dominik Heider BioData Mining 2011, 4:26 (14 November 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Machine-learning can be used to predict the resistance of HIV-1 to antiretroviral drugs like Bevirimat in order to identify which patients will benefit from these new drugs, thereby improving the provision of a personalized therapy.
	11. 197 Accesses	Research Database mining for selection of SNP markers useful in admixture mapping Tesfaye M Baye, Hemant K Tiwari, David B Allison, Rodney C Go BioData Mining 2009, 2:1 (14 February 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12. 197 Accesses	Editorial Mining the diseasome Davnah Urbach, Jason H Moore BioData Mining 2011, 4:25 (9 September 2011) Abstract \| Full text \| PDF \| PubMed
	13. 179 Accesses	Review A review of estimation of distribution algorithms in bioinformatics Rubén Armañanzas, Iñaki Inza, Roberto Santana, Yvan Saeys, Jose Flores, Jose Lozano, Yves Peer, Rosa Blanco, Víctor Robles, Concha Bielza, Pedro Larrañaga BioData Mining 2008, 1:6 (11 September 2008) Abstract \| Full text \| PDF \| PubMed
	14. 163 Accesses	Research DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization Sinan Erten, Gurkan Bebek, Rob M Ewing, Mehmet Koyutürk BioData Mining 2011, 4:19 (24 June 2011) Abstract \| Full text \| PDF \| PubMed
	15. 149 Accesses	Methodology Discrete derivative: a data slicing algorithm for exploration of sharing biological networks between rheumatoid arthritis and coronary heart disease Guang Zheng, Miao Jiang, Xiaojuan He, Jing Zhao, Hongtao Guo, Gao Chen, Qinglin Zha, Aiping Lu BioData Mining 2011, 4:18 (23 June 2011) Abstract \| Full text \| PDF \| PubMed
	16. 147 Accesses	Research Fast approximate hierarchical clustering using similarity heuristics Meelis Kull, Jaak Vilo BioData Mining 2008, 1:9 (22 September 2008) Abstract \| Full text \| PDF \| PubMed
	17. 143 Accesses	Short report Detection of putative new mutacins by bioinformatic analysis using available web tools Guillaume G Nicolas BioData Mining 2011, 4:22 (14 July 2011) Abstract \| Full text \| PDF \| PubMed
	18. 138 Accesses	Research Taxon ordering in phylogenetic trees by means of evolutionary algorithms Francesco Cerutti, Luigi Bertolotti, Tony L Goldberg, Mario Giacobini BioData Mining 2011, 4:20 (1 July 2011) Abstract \| Full text \| PDF \| PubMed
	19. 135 Accesses	Research 3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini BioData Mining 2009, 2:8 (4 December 2009) Abstract \| Full text \| PDF \| PubMed
	20. 134 Accesses	Methodology Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data Sami K Kilpinen, Kalle A Ojala, Olli P Kallioniemi BioData Mining 2011, 4:5 (31 March 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21. 132 Accesses	Review Clustering-based approaches to SAGE data mining Haiying Wang, Huiru Zheng, Francisco Azuaje BioData Mining 2008, 1:5 (17 July 2008) Abstract \| Full text \| PDF \| PubMed
	22. 130 Accesses	Research A comparison of machine learning techniques for survival prediction in breast cancer Leonardo Vanneschi, Antonella Farinaccio, Giancarlo Mauri, Mauro Antoniotti, Paolo Provero, Mario Giacobini BioData Mining 2011, 4:12 (11 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	23. 129 Accesses	Research Hill-Climbing search and diversification within an evolutionary approach to protein structure prediction Camelia Chira, Dragos Horvath, D Dumitrescu BioData Mining 2011, 4:23 (30 July 2011) Abstract \| Full text \| PDF \| PubMed
	24. 128 Accesses	Research Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration Rex T Nelson, Shulamit Avraham, Randy C Shoemaker, Gregory D May, Doreen Ware, Damian DG Gessler BioData Mining 2010, 3:3 (4 June 2010) Abstract \| Full text \| PDF \| PubMed
	25. 128 Accesses	Methodology A comparison of genomic copy number calls by Partek Genomics Suite, Genotyping Console and Birdsuite algorithms to quantitative PCR Britney L Grayson, Thomas M Aune BioData Mining 2011, 4:8 (13 April 2011) Abstract \| Full text \| PDF \| PubMed